Determining the Nature of Late Gunn-Peterson Troughs with Galaxy Surveys

Recent observations have discovered long (up to ~110 Mpc/h), opaque Gunn-Peterson troughs in the z ~ 5.5 Lyman-alpha forest, which are challenging to explain with conventional models of the post-reionization intergalactic medium. Here we demonstrate that observations of the galaxy populations in the vicinity of the deepest troughs can distinguish two competing models for these features: deep voids where the ionizing background is weak due to fluctuations in the mean free path of ionizing photons would show a deficit of galaxies, while residual temperature variations from extended, inhomogeneous reionization would show an overdensity of galaxies. We use large (~550 Mpc/h) semi-numerical simulations of these competing explanations to predict the galaxy populations in the largest of the known troughs at z ~ 5.7. We quantify the strong correlation of Lyman-alpha effective optical depth and galaxy surface density in both models and estimate the degree to which realistic surveys can measure such a correlation. While a spectroscopic galaxy survey is ideal, we also show that a relatively inexpensive narrowband survey of Lyman-alpha-emitting galaxies is ~90% likely to distinguish between the competing models.Comment: 12 pages, 16 figures. Submitted to Ap

DNA nano-mechanics: how proteins deform the double helix

It is a standard exercise in mechanical engineering to infer the external forces and torques on a body from its static shape and known elastic properties. Here we apply this kind of analysis to distorted double-helical DNA in complexes with proteins. We extract the local mean forces and torques acting on each base-pair of bound DNA from high-resolution complex structures. Our method relies on known elastic potentials and a careful choice of coordinates of the well-established rigid base-pair model of DNA. The results are robust with respect to parameter and conformation uncertainty. They reveal the complex nano-mechanical patterns of interaction between proteins and DNA. Being non-trivially and non-locally related to observed DNA conformations, base-pair forces and torques provide a new view on DNA-protein binding that complements structural analysis.Comment: accepted for publication in JCP; some minor changes in response to review 18 pages, 5 figure + supplement: 4 pages, 3 figure

Closed-form expressions for correlated density matrices: application to dispersive interactions and example of (He)2

Empirically correlated density matrices of N-electron systems are investigated. Exact closed-form expressions are derived for the one- and two-electron reduced density matrices from a general pairwise correlated wave function. Approximate expressions are proposed which reflect dispersive interactions between closed-shell centro-symmetric subsystems. Said expressions clearly illustrate the consequences of second-order correlation effects on the reduced density matrices. Application is made to a simple example: the (He)2 system. Reduced density matrices are explicitly calculated, correct to second order in correlation, and compared with approximations of independent electrons and independent electron pairs. The models proposed allow for variational calculations of interaction energies and equilibrium distance as well as a clear interpretation of dispersive effects on electron distributions. Both exchange and second order correlation effects are shown to play a critical role on the quality of the results.Comment: 22 page

Smectic Phases with Cubic Symmetry: The Splay Analog of the Blue Phase

We report on a construction for smectic blue phases, which have quasi-long range smectic translational order as well as long range cubic or hexagonal order. Our proposed structures fill space with a combination of minimal surface patches and cylindrical tubes. We find that for the right range of material parameters, the favorable saddle-splay energy of these structures can stabilize them against uniform layered structures.Comment: 4 pages, 4 eps figures, RevTe

The long period eccentric orbit of the particle accelerator HD167971 revealed by long baseline interferometry

Using optical long baseline interferometry, we resolved for the first time the two wide components of HD167971, a candidate hierarchical triple system known to efficiently accelerate particles. Our multi-epoch VLTI observations provide direct evidence for a gravitational link between the O8 supergiant and the close eclipsing O + O binary. The separation varies from 8 to 15 mas over the three-year baseline of our observations, suggesting that the components evolve on a wide and very eccentric orbit (most probably e>0.5). These results provide evidence that the wide orbit revealed by our study is not coplanar with the orbit of the inner eclipsing binary. From our measurements of the near-infrared luminosity ratio, we constrain the spectral classification of the components in the close binary to be O6-O7, and confirm that these stars are likely main-sequence objects. Our results are discussed in the context of the bright non-thermal radio emission already reported for this system, and we provide arguments in favour of a maximum radio emission coincident with periastron passage. HD167971 turns out to be an efficient O-type particle accelerator that constitutes a valuable target for future high angular resolution radio imaging using VLBI facilities.Comment: 8 pages, including 4 figures, accepted by Monthly Notices of the Royal Astronomical Societ

Pathways to double ionization of atoms in strong fields

We discuss the final stages of double ionization of atoms in a strong linearly polarized laser field within a classical model. We propose that all trajectories leading to non-sequential double ionization pass close to a saddle in phase space which we identify and characterize. The saddle lies in a two degree of freedom subspace of symmetrically escaping electrons. The distribution of longitudinal momenta of ions as calculated within the subspace shows the double hump structure observed in experiments. Including a symmetric bending mode of the electrons allows us to reproduce the transverse ion momenta. We discuss also a path to sequential ionization and show that it does not lead to the observed momentum distributions.Comment: 10 pages, 10 figures; fig.6 and 7 exchanged in the final version accepted for publication in Phys. Rev.

Non-sequential triple ionization in strong fields

We consider the final stage of triple ionization of atoms in a strong linearly polarized laser field. We propose that for intensities below the saturation value for triple ionization the process is dominated by the simultaneous escape of three electrons from a highly excited intermediate complex. We identify within a classical model two pathways to triple ionization, one with a triangular configuration of electrons and one with a more linear one. Both are saddles in phase space. A stability analysis indicates that the triangular configuration has the larger cross sections and should be the dominant one. Trajectory simulations within the dominant symmetry subspace reproduce the experimentally observed distribution of ion momenta parallel to the polarization axis.Comment: 9 pages, 8 figures, accepted for publication in Phys. Rev.

Study of HST counterparts to Chandra X-ray sources in the Globular Cluster M71

We report on archival Hubble Space Telescope (HST) observations of the globular cluster M71 (NGC 6838). These observations, covering the core of the globular cluster, were performed by the Advanced Camera for Surveys (ACS) and the Wide Field Planetary Camera 2 (WFPC2). Inside the half-mass radius (r_h = 1.65') of M71, we find 33 candidate optical counterparts to 25 out of 29 Chandra X-ray sources while outside the half-mass radius, 6 possible optical counterparts to 4 X-ray sources are found. Based on the X-ray and optical properties of the identifications, we find 1 certain and 7 candidate cataclysmic variables (CVs). We also classify 2 and 12 X-ray sources as certain and potential chromospherically active binaries (ABs), respectively. The only star in the error circle of the known millisecond pulsar (MSP) is inconsistent with being the optical counterpart. The number of X-ray faint sources with L_x>4x10^{30} ergs/s (0.5-6.0 keV) found in M71 is higher than extrapolations from other clusters on the basis of either collision frequency or mass. Since the core density of M71 is relatively low, we suggest that those CVs and ABs are primordial in origin.Comment: 12 pages, 6 figures. Accepted for publication in Astronomy and Astrophysic